Handelsman Lab

Microbiology Publications in 2010s

2016

Stulberg, E.R., G.L. Lozano, J.B. Morin, H. Park, E.G. Baraban, C. Mlot, C. Heffelfinger, G.M. Phillips, J.S. Rush, A.J. Phillips, N.A. Broderick, M.G. Thomas, E.V. Stabb, and J. Handelsman. 2016. Genomic and secondary metabolite analyses of Streptomyces sp. 2AW provide insight into the evolution of the cycloheximide pathway. Frontiers in Microbiology. 7: 573.

2015

Miles J., J.F. Holt, and J. Handelsman. 2015. Allies and adversaries: roles of the microbiome in infectious disease. Microbe Magazine. 10: 370-374.

Holt, J.F., M.R. Kiedrowski, K.L. Frank, J. Du, C. Guan, N.A. Broderick, G.M. Dunny, and J. Handelsman. 2015. Enterococcus faecalis 6-phosphogluconolactonase is required for both commensal and pathogenic interactions with Manduca sexta. Infection and Immunity. 83(1): 396-404.

2014

Udikovic-Kolic, N., F. Wichmann, N.A. Broderick, and J. Handelsman. 2014. Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization. Proceedings of the National Academy of Sciences. doi:10.1073/pnas.1409836111.

Shade, A., S.E. Jones, J.G. Caporaso, J. Handelsman, R. Knight, N. Fierer, and J.A. Gilbert. 2014. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio. 5(4): e01371-14.

Wichmann, F., N. Udikovic-Kolic, S. Andrew, and J. Handelsman. 2014. Diverse antibiotic resistance genes in dairy cow manure. mBio. 5(2): e01017-13.

2013

Blum, J.E., C.N. Fischer, J. Miles, and J. Handelsman. 2013. Frequent replenishment sustains the beneficial microbiome of Drosophila melanogaster. mBio. 4(6): e00860-13. doi:10.1128/mBio.00860-13.

Shade, A., A.K. Klimowicz, R.N. Spear, M. Linske, J.J. Donato, C.S. Hogan, P.S. McManus, and J. Handelsman. 2013. Streptomycin application has no detectable effect on bacterial community structure in apple orchard soil. Applied and Environmental Microbiology. 79(21): 6617-6625.

Baraban, E.G., J.B. Morin, G.M. Phillips, A.J. Phillips, S.A. Strobel, and J. Handelsman. 2013. Xyolide, a bioactive nonenolide from an Amazonian endophytic fungus, Xylaria feejeensis. Tetrahedron Letters. doi: 10.1016/j.tetlet.2013.05.093.

Shade, A., J.G. Caporaso, J. Handelsman, R. Knight, and N. Fierer. 2013. A meta-analysis of changes in bacterial and archaeal communities with time. ISME Journal. doi: 10.1038/ismej.2013.54.

Shade, A., P.S. McManus, and J. Handelsman. 2013. Unexpected diversity during community succession in the apple flower microbiome. mBio. 4(2): e00602-12. doi:10.1128/mBio.00602-12.

2012

Shade, A., H. Peter, S.D. Allison, D. Baho, M. Berga, H. Buergmann, D.H. Huber, S. Langenheder, J.T. Lennon, J.B. Martiny, K. Matulich, T.M. Schmidt, and J. Handelsman. 2012. Fundamentals of microbial community resistance and resilience. Frontiers in Microbiology. 3: 417. doi: 10.3389/fmicb.2012.00417.

Araujo J.F., A.P. de Castro, M.M. Costa, R.C. Togawa, G.J. Júnior, B.F. Quirino, M.M. Bustamante, L. Williamson, J. Handelsman, and R.H. Krüger. 2012. Characterization of soil bacterial assemblies in Brazilian savanna-like vegetation reveals acidobacteria dominance. Microb Ecol. 64(3): 760-770.

Shade, A., C.S. Hogan, A.K. Klimowicz, M. Linske, P.S. McManus, and J. Handelsman. 2012. Culturing captures members of the soil rare biosphere. Environmental Microbiology. 14(9): 2247-2252.

McMahon, M.D., C. Guan, J. Handelsman, and M.G. Thomas. 2012. Metagenomic analysis of Streptomyces lividans reveals host-dependent functional expression. Applied and Environmental Microbiology. 78:3622-3629.

Shade, A. and J. Handelsman. 2012. Beyond the Venn diagram: the hunt for a core microbiome. Environmental Microbiology. 14(1): 4-12.

2011

de Castro, A.P., B.F. Quirino, H. Allen, L.L. Williamson, J. Handelsman, and R.H. Kruger. 2011. Construction and validation of two metagenomic DNA libraries from Cerrado soil with high clay content. Biotechnology Letters. 33: 2169-2175.

Mason, K.L., T.A. Stepien, J.E. Blum, J.F. Holt, N.H. Labbe, J.S. Rush, K.F. Raffa, and J. Handelsman. 2011. From commensal to pathogen: translocation of Enterococcus faecalis from the midgut to the hemocoel of Manduca sexta. mBio. 2(3): e00065-11.

2010

Schloss, P.D., H.K. Allen, A.K. Klimowicz, C. Mlot, J.A. Gross, S. Savengsuksa, J. McEllin, J. Clardy, R.W. Ruess, and J. Handelsman. 2010. Psychotrophic strain of Janthinobacterium lividium from a cold Alaskan soil produces prodigiosin. DNA and Cell Biology. 29(9): 533-41. [PubMed]

Borlee, B.R., G.D. Geske, H.E. Blackwell, and J. Handelsman. 2010. Identification of synthetic inducers and inhibitors of the quorum-sensing regulator LasR in Pseudomonas aeruginosa by high-throughput screening. Applied and Environmental Microbiology. 76(24): 8255-8258. [PubMed]

Klimowicz, A.K., T.A. Benson, and J. Handelsman. 2010. A quadruple-enterotoxin-deficient mutant of Bacillus thuringiensis remains insecticidal. Microbiology. 156: 3575-3583. [PubMed]

Lang, K.S., J.M. Anderson, S. Schwarz, L. Williamson, J. Handelsman and R.S. Singer. 2010. Novel florfenicol and chloramphenicol resistance gene discovered in Alaskan soil by using functional metagenomics. Applied and Environmental Microbiology. 76(15): 5321-5326. [PubMed]

Donato, J., L.A. Moe, B.J. Converse, K.D. Smart, F.C. Berklein, P.S. McManus and J. Handelsman. 2010. Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins. Applied and Environmental Microbiology. 76(13): 4396-4401. [PubMed]

Broderick, N.A., E. Vasquez, J. Handelsman and K. F. Raffa. 2010. Effect of clonal variation among hybrid poplars on susceptibility of gypsy moth (Lepidoptera: Lymantriidae) to Bacillus thuringiensis subsp. kurstaki. Journal of Economic Entomology. 103(3): 718-725. [PubMed]

Broderick, N.A., K.F. Raffa and J. Handelsman. 2010. Chemical modulators of the innate immune response alter gypsy moth larval susceptibility to Bacillus thuringiensis. BMC Microbiology. 10(1):129. [PubMed]

Allen, H.K., J. Donato, H.H. Wang, K.A. Cloud-Hansen, J. Davies and J. Handelsman. 2010. Call of the wild: antibiotic resistance genes in natural environments. Nature Reviews Microbiology. 8(4): 251-259. [PubMed]

Robinson, C.J., P.D. Schloss, Y. Ramos, K.F. Raffa and J. Handelsman. 2010. Robustness of the bacterial community in the cabbage white butterfly larval midgut. Microbial Ecology 59(2): 199-211. [PubMed]